Azzler It's missing because it's not required. Because you will only use the "upload-this-to-upgrade-to-3.2" zip if you already have Foodomaa running on your domain and if you already have Foodomaa running, you must already have the missing folders.
If you are doing a fresh installation make sure to use the "upload-this-for-fresh-installation-3.2" zip and not the "upload-this-to-upgrade-to-3.2"
Upload the whole "assets" folder from fresh installation to your server. (this will override the favicon and logos) but will fix your issue.